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GPGPU Libraries Benchmark
Kula, Michal ; Korček, Pavol (referee) ; Pospíchal, Petr (advisor)
Bachelor´s thesis deals with principles of graphics adaptors work and their using for common calculations by the help of graphics library and bachelor´s thesis deals also with comparing of these libraries. In the bachelor´s thesis, there is explanation of suitability of graphics adaptors usage for different types of calculations, restrictions and efficiency usage of programming method on basis of principles of graphics adaptors work. In the bachelor´s thesis, there are comparisons of graphics libraries Nvidia Cuda and OpenCL, their comparisons both in transfer rates and for simple and complex calculations. Bachelor´s thesis results are interpretations of tests and suitability assessments of utilization of graphics libraries in selected calculations.
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Application for Alignment of DNA Parts
Kašpárek, Tomáš ; Žák, Jakub (referee) ; Rozman, Jaroslav (advisor)
This thesis deals with DNA sequences alignment methods with focus on execution speed of given task and its optimality. The outcome of this thesis results in multiple programs, which presents DNA alignment algorithms and their versions programmed with OpenCL libraries, which are optimized on calculation rate. Text of this thesis apprises reader with DNA alignment problematic and its importance in biology. Further, algorithms for DNA alignment and options of their speed-up using libraries like CUDA or OpenCL are presented.
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GPGPU Libraries Benchmark
Kula, Michal ; Korček, Pavol (referee) ; Pospíchal, Petr (advisor)
Bachelor´s thesis deals with principles of graphics adaptors work and their using for common calculations by the help of graphics library and bachelor´s thesis deals also with comparing of these libraries. In the bachelor´s thesis, there is explanation of suitability of graphics adaptors usage for different types of calculations, restrictions and efficiency usage of programming method on basis of principles of graphics adaptors work. In the bachelor´s thesis, there are comparisons of graphics libraries Nvidia Cuda and OpenCL, their comparisons both in transfer rates and for simple and complex calculations. Bachelor´s thesis results are interpretations of tests and suitability assessments of utilization of graphics libraries in selected calculations.
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Application for Alignment of DNA Parts
Kašpárek, Tomáš ; Žák, Jakub (referee) ; Rozman, Jaroslav (advisor)
This thesis deals with DNA sequences alignment methods with focus on execution speed of given task and its optimality. The outcome of this thesis results in multiple programs, which presents DNA alignment algorithms and their versions programmed with OpenCL libraries, which are optimized on calculation rate. Text of this thesis apprises reader with DNA alignment problematic and its importance in biology. Further, algorithms for DNA alignment and options of their speed-up using libraries like CUDA or OpenCL are presented.
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